nifty.ground_truth¶

Functions¶

nifty.ground_truth.overlap(segmentation, groundTruth)¶

factory function for nifty.ground_truth.Overlap

create an instance of nifty.ground_truth.Overlap which can be used to project ground truth to some segmentation / over-segmentation

Parameters:	segmentation (numpy.ndarray) – The segmentation / over-segmentation groundTruth (numpy.ndarray) – The ground truth as node labeling.
Returns:	[description] [type]

nifty.ground_truth.seg2dToLiftedEdges()¶

nifty.ground_truth.seg3dToCremiZ5Edges()¶

nifty.ground_truth.segToEdges2D()¶

nifty.ground_truth.thinSegFilter(seg, sigma, radius=None)¶

Classes¶

class nifty.ground_truth.Overlap¶

bleeding()¶

counts()¶

differentOverlaps()¶

overlapArrays()¶

overlapArraysNormalized()¶

class nifty.ground_truth.RandError¶

cutsInPrediction¶

cutsInTruth¶

error¶

falseCuts¶

falseJoins¶

index¶

joinsInPrediction¶

joinsInTruth¶

precisionOfCuts¶

precisionOfJoins¶

recallOfCuts¶

recallOfJoins¶

trueCuts¶

trueJoins¶

class nifty.ground_truth.VariationOfInformation¶

value¶

valueFalseCut¶

valueFalseJoin¶